The problem is farming seafood in its contemporary best-practice manner which is focused on output rather than maintaining a sustainable ecology.
All other issues - be it wild-caught marine-animal ingredients being eroded as a finite input, or simply killing off all-around it due to the increased prevalence of sea lice and industrial activity - are a product of the practices, not the concept.
The problem is exacerbated in a grotesque feedback loop as well as the sea lice can transfer from farms and reduce the health and survival of wild salmon and trout in particular - leading to chemical treatments and other practices which result in everything from algae bloom to facilitating invasive species to straight-forward pollution.
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You can't have a sustainable ecology when China sends a city of trawlers to devastate fish stocks around the world and then sends it all back to China. It leaves the countries that were depending on that fish suffering with no repercussions for China. As far as I'm concerned, those cities of fishing boats should be sunk because it's an act of war by China.