I've been thinking about this all day. I think the best approach is probably twofold:

1) Thrown errors should track the original error to retain its context. In JavaScript errors have a `cause` option which is perfect for this. You can use the `cause` to hold a deep stack trace even if the error has been handled and wrapped in a different error type that may have a different semantics in the application.

2) For logging that does not stop program execution, I think this is a great case for dependency injection. If a library allows its consumer to provide a logger, the application has complete control over how and when the library logs, and can even change it at runtime. If you have a disagreement with a library, for example it logs errors that you want to treat as warnings, your injected logger can handle that.