Downloading over HTTPS does not help with that (although it can prevent spies from seeing what files you are downloading) unless you can independently verify the server's keys. The certificate is intended to do this but the way that standard certificate authorities work will only verify the domain name, and has some other limitations. TLS does have other benefits, but it does a different thing. Using only TLS to verify the packages is not very good, especially with the existing public certificate authorities.

If you only need a specific version and you already know what that one is, then using a cryptographic hash will be a better way to verify packages, although that only applies for one specific version of one specific package. So, using an encrypted protocol (HTTPS or any other one) alone will not help, although it will help in combination with other things; you will need to do other things as well, to improve the security.