You might be right in your use case, but still, JS is not the benchmark to beat. Native Client was already almost as fast as native code, started up almost instantly, and didn't get a decade of engineering with who knows how much money behind it invested into it.
Webassembly that was supposed to replace it needs to be at least as good, that was the promise. We're a decade in, and still Wasm is nowhere near while it has accumulated an insane amount of engineering complexity in its compiler, and its ability to run native apps without tons of constraints and modifications is still meh as is the performance.
To be fair, Native Client achieved much of its speed by reusing LLVM and the decades of work put into that excellent codebase.
Also, Native Client started up so fast because it shipped native binaries, which was not portable. To fix that, Portable Native Client shipped a bytecode, like wasm, which meant slower startup times - in fact, the last version of PNaCl had a fast baseline compiler to help there, just like wasm engines do today, so they are very similar.
And, a key issue with Native Client is that it was designed for out-of-process sandboxing. That is fine for some things, but not when you need synchronous access to Web APIs, which many applications do (NaCl avoided this problem by adding an entirely new set of APIs to the web, PPAPI, which most vendors were unhappy about). Avoiding this problem was a major principle behind wasm's design, by making it able to coexist with JS code (even interleaving stack frames) on the main thread.