Hmm, perhaps I'm missing something, so let's go through it step by step and see where the disconnect is:

- There's a cloned 'my-project' git repo on the base OS

- The 'Vagrantfile' is added to the project

- 'vagrant up', 'vagrant ssh' and claude login is run inside the VM

At this stage, besides the source code and the Claude Code token (after logging in), there are no other credentials on the VM: no SSH keys, no DB credentials, no API tokens, nothing.

There is also no need to add:

- SSH keys or GitHub tokens: because git push/pull is handled outside the VM

- DB credentials: because Claude can just install a DB inside the VM and run the project migrations against that isolated instance, not any shared/production database

API tokens can definitely be a problem if you need external service integration. But that's an explicit opt-in decision, you'd have to deliberately add those credentials to the Vagrantfile or sync them in. At that point, yes, you need proper token scoping and permissions.