alt Hacker NewsThis doesn't seem to be designed for leakers, i.e. people sending PDF's -- it's specifically for people receiving untrusted files, i.e. journalists.
And specifically about them not being hacked by malicious code. I'm not seeing anything that suggests it's about trying to remove traces of a file's origin.
I don't see why it would need a warning for something it's not designed for at all.
It would be natural for a leaker to assume that the PDF contains something "extra" and to try and and remove it with this method. It may not occur to them that this something extra could be part of the content they are going to get back.