I agree, and I think that your claim is compatible with the comment that you are responding to. Indeed, perhaps it's turtles all the way down and there is systematic complexity upon systematic complexity governing our universe that humanity has been just too limited to experience.

For a historical analogy, classical physics was and is sufficient for most practical purposes, and we didn't need relativity or quantum mechanics until we had instruments that could manipulate them, or that at least experienced them. While I guess that there were still macroscopic quantum phenomena, perhaps they could have just been treated as empirical material properties without a systematic universal theory accounting for them, when instruments would not have been precise enough to explore and exploit predictions of a systematic theory.