If Fukushima get hit by a disaster that is outside the design spec then the engineering root cause of the failure is established. There isn't some detailed process needed to figure out how a design should tolerate out-of-design events. And there isn't a confluence of smaller events, it is a very cut and dry situation (well, unstable and wet situation I suppose). There was one event that caused the failure. An event on a biblical scale that was hard to miss.

If you want Fukushima to tolerate things it wasn't designed to tolerate or fail in ways it wasn't designed to fail in then the swiss cheese model isn't going to be much help. You're going to need to convince politicians and corporate entities that their risk tolerance is too high. Which in a rational world would be a debate because it isn't obvious that the risk tolerances were inappropriate.