As for the notebook part, it's fascinating because it genuinely is kind of like software design if you try and impose more structure onto it - how is it reusable for the future? Can you genuinely predict the space of possible writings that you want, or does it, in the authors words, homogenize?
I've taken an approach where I treat the act of deep writing (or shallow writing, or any writing) as means in it of themselves. Not sure how absolutely effective this is but I can definitely say that my thinking changed.
#1 step to writing is to stop giving a f and I didn't not learn that until I was 21. Too easy to get caught up in schoolwork and the "proper" way to do things I feel.