Certbot has earned my ire on just about every occasion I've had to interact with it. It is a terrible program and I can't wait to finish replacing it everywhere.
The new setup is using uAcme and nsupdate to do DNS-01 challenges. No more fiddling with any issues in the web server config for a particular virtual host, like some errant rewrite rule that prevents access to .well-known/.
I mean certbot handles the just issue me a cert via DNS-01 and I'll do the rest flow just fine. Massive overkill of a program for just that use-case but it's been humming along for me for years at this point. What's the selling point for uACME?