This is just making the very common categorization error here: you're equating low performance drones, implied to be about DJI sized, with the performance of an F-35.
Now you're about to say "but I meant drones with better capability!" And they do exist: and they're no longer that cheap, nor compact because it turns out a drone with roughly the performance of an F-35 will need an airframe, engine and sensor suite...roughly as expensive as an F-35. And suddenly this is no longer a platform you can just crash into things. Nor will you be ordering them by the thousand. Nor do they fit in a cargo container.
I've seen the range of drones that is available and they are very impressive, the variety is precisely what makes them so powerful: you can adapt mix and match to whatever mission profile you have in mind and there most likely will be something that you can use unmodified. And if the task requires it modifications can be done on very short notice.
An F-35 is of course going to absolutely outclass any drone. But a hundred million (roughly) spent on drones is going to do more damage than that F-35 and is going to be more versatile.
The second that F-35 lands it is going to be at risk from a (low cost) drone attack. And some aicraft aren't even safe in the sky anymore:
https://www.youtube.com/watch?v=ACjCP-Dt3GY
Speaking of Aircraft Carriers, how is the Ford doing?