Company founder in Japan here. This is largely how I read this specific news--its narrowly scoped to prevent patterns of abuse, which there have indeed been isolated cases tantamount to human trafficking.
That being said, there is a broader trend, that Japan's immigration authorities are becoming more foreigner-hostile, reflecting a broader political view shift in Japanese society (see: Sanseito political party) and one could argue in the US and globally.
One data point: a few months back we had one of our employees denied a Permanent Resident Visa due to a clerical error where our company forgot to notify the immigration bureau of an address change--we literally moved our office across the street, same city block. Our lawyer said such a case was unheard of a few years ago; these were always handled as simple corrections, instead the poor chap had to go to the back of the 9+ month waiting queue.
Our lawyer says the news is too new to know what concrete ramifications it will actually have on us, a tech company which uses English as the main language for engineering roles.