> Seems like this would probably be solved if github returned a patch file formatted like `git show` provides, specifically with the commit message indented? I do see that `git format-patch` doesn't do this indentation though.

This would be "solved" if the patch file only included the patch. That's pretty straightforward. The file github provides includes fake email headers for no particular reason. The commit message appears to be part of the subject header. The subject header is never terminated, so arguably applying this patch shouldn't do anything. (Because the actual patch data is also part of the email headers.) The other headers aren't terminated either, so actually there is no subject header. This shouldn't really matter, because the patch file isn't email, but it does seem to want to pretend to be.

The usual question to ask here would be "why are you applying patch files from an untrusted source?". If patch(1) was stricter about the format of its input files... applying patches from an untrusted source would still be a good way to get owned. If you think I can get you to patch inappropriate files by writing a fake diff into my commit message... wait until you see what I can do by writing those same changes into the real diff.