> when facing problems like this, try using the well-known "notepad file" methods to track problems like this, so that if the over-eager LLM starts applying quick code fixes – although YOU were the "problem's" source – it will be easier to undo or clean up code that was added to the repository during a confusing debug session. For me, it has been difficult to separate "code generated due to more resilient improvements" vs. "code generated during debugging that sort of changed some specific step of the script".

Yeah, I have definitely hit this as well. Sometimes I've named a function or variable in a way that misuses a term or concept, or I've changed what something does without fully thinking it through. The LLM sees that code, notices an inconsistency, and makes a guess about what I meant. But because I screwed up, only I know what I really meant (or what I "should have meant"). So the LLM ends up writing a fix that breaks assumptions made in other parts of the code— assumptions that fit with my overall original mental picture, but not the misnomer the LLM got snagged on. Or it writes a small-scoped fix but the mistake of mine it stumbled upon actually merits rethinking and redesigning how some parts interact, so even if its fix is better than what I had before, I want to unwind that change so I can redefine my interfaces or whatever.

That's definitely worth calling out: it's not only the LLM's mistakes that make it more likely to commit future mistakes. Any mistakes in the codebase can compound like that. If you want an LLM to do useful work for you, it's more relevant than ever to "tidy first".