1) The flight markets are different now. There's been a large increase in both transatlantic and transpacific flights, especially the latter. These change the economics of considering only these types of flights, flying only over uninhabited regions.

2) The technology has changed. We're much better at dealing with sonic booms now. You can't get rid of them entirely, but you can reshape them. You can't send everything "up" but the longer of a tail you can make the more the sound dissipates by the time it hits the ground. There's lots of research around this and as you can imagine, incredibly important for the military. You can't fly fast spy aircraft if they are just announcing their position while flying around. Sure, there are satellites, but those are predictable by the enemy, you'll always need aircraft to do this.