Before your muscle memory is updated, all you need to remember is how to “quality check” the knot when you’re done. If the loops are perpendicular, it’s wrong, they should be aligned with the laces.
If it landed up perpendicular, start over (i.e. the part before you make the loops) with doing the opposite of what you did before e.g. right-over-left rather than left-over-right.
For me it was very easy to fix the pre-loop stage, trying to change the loop stage seemed way harder to me as I was already so practiced at it.
I do a similar quality check when tying a square knot (right over left, left over right but without the bows - probably the default knot for something you don't intend to ever untie and don't have a Scout's encyclopedic knowledge of more specialized knots) - since it doesn't have the bows, the quality check is that it should have a line of symmetry whereas if you repeat the same direction twice the finished knot is more of a spiral, having no line of symmetry.