alt Hacker Newsfunctional parts not being copyrightable means that you can't claim a program is a copyright violation based on the fact it does the exact same thing based on compatibility reasons (you can copy what the program does). E.g. git stores refs in .git/refs, so does grit, that's not a violation. You still can't copy the program.
Yes... and now we get to the fact specific question of "did they copy the program". Or actually the answer to that is plainly "no" - they made something similar from it - and didn't run ctrl-c ctrl-v in an unlicensed manner, but "did they copy the relevant facets of the program into the new similar thing".