I feel like the charts could be clearer if they showed the primary user experience difference between RSS and AT/AP, which is how do the arrows flow for Bob's response to Cat's post. I understand it fairly well for AP, I don't think I actually get it for AT.
I have a different article that goes into this here: https://overreacted.io/open-social/#open-social
Also here: https://overreacted.io/a-social-filesystem/#links
TLDR: at the hosting layer, it's like <a href> links, but in JSON. Links can refer to other person's repo (even if it's hosted somewhere else). And then apps index everything, so they can present a coherent aggregated view (like a post thread).