This is an application of the disparate impact doctrine. Even facially neutral policies are considered suspect if they produce results that correlate against protected groups, irrespective of intent.
This doctrine is the basis for much of employment law. It is a significant reason why employers don't administer IQ tests (or equivalents) to screen candidates since ~the 90s.
A common objection to the doctrine is that it leads to unfalsifiable discrimination claims, which is why it seems nonsensical to you.
Importantly, the rule is not used to resolve racial discrimination claims. It's purely meant as the first test to evaluate whether a deeper dive is warranted. Fast, first pass data analysis tools are very useful for spotting unintended consequences.
And a common rebuttal to the objection is that systemic racism is often difficult to untangle in a way that produces a neat chain of cause and effect (not least of which because discrimination can happen unconsciously or secretly); because the impact exists whether intent can be shown or not, the desire remains to ameliorate that impact.
If the issue happens upstream of the defendant to a claim - generally an organization being sued by an individual with fewer resources - it incentivizes such entities to push for changes upstream, so that they don't get stuck with the bill.