Practical communication is not an exercise in logical deduction. The meaning of those terms is not equivalent for exactly the reason you noted.
human beings are not always perfect communicators, regrettably.
Luckily, other humans can 'clear things up' :)
obviously you can use much to mean little with a how in front but generally with a little snarky aside like ", which is not much at all," after the "how much", but yes, in typical usage they are not interpreted the same, although I'd say the difference really only becomes important in comparative usage as in "how little for how much" and similar examples.
on edit: took out hows to avoid confusion.