I've been in this situation too. But I was trained for it and had a mental checklist to follow. I never had a GPS, though. It seems from the details of the article, which you rightly highlighted, that the pilots were using their GPS as a crutch and had no ability to fall back on basic dead reckoning. It seems they didn't know where they were. That's pretty inexcusable, like embarrassing even.
I don't fly anymore, but I see similar behaviors developing on the water. People who use chartplotters for navigation don't have a very good understanding of what's going on around them. If you're just interactively following a computed lay line or a plotted course you don't really need to know what the currents are doing. You don't need to know what the hazards are. You're not actively engaged in navigating the boat.