This shows that large companies making closed-source CPUs cannot be trusted. No doubt they would add whatever the government asks them to add.

What can be done to mitigate this? One option would be to buy a large FPGA and flash it with an open-source CPU. Another would be to emulate a CPU, working with encrypted data and commands, so that even if the backdoor in a host CPU tries to overwrite memory, it would only crash the emulated OS. One more option would be to run the code in a Virtual Machine like QEMU which translates the code and prevents issuing unknown instructions.