I think having AI keep it's _own_ notes in Obsidian is a good idea because it makes them convenient for you to read, but yeah you need to quarantine agent ideas from your own ideas because otherwise you get bad cito-genesis problems. https://xkcd.com/978/
I don't understand. Are you saying that AI should write notes but then they should be excluded from the AI's context?
This might work to keep work separate:
https://github.com/eighttrigrams/us-vs-them