we've started using parallel repos in diff ways for this reason depending on repo purpose, scope etc.

full private repo including session transcripts, etc. agent attribution etc, with public repo that only shows selected subset without sessions ids, some or all agents, etc.

alternatively, we sometimes also do a separate chat only repo or server etc if cross-team agent chat access worth it and don't bother with private / public just disable agents in code repo

have also done some other variants etc. bit of pain to init config, does help with reducing the agent clutter, improve chat security boundaries in case any keys or sensitive env were in any chats if PII / sensitive data checker miss etc.