Is that "difficult" quote from a separate source? I can't find it in the text of the linked report.
Also, the report says that both red and blue states had both overcounts and undercounts, which is a different picture than "over counts in blue states". It is accurate that more blue states had overcounts and more red states had undercounts.
I realise your question is rhetorical, but the report does offer a possible answer: "The 2020 Census faced many challenges such as conducting fieldwork during the COVID-19 pandemic. Other challenges to the 2020 Census included con- troversy around a proposed citizenship question and changes in the duration of the Nonresponse Followup operation." It's plausible that those "challenges" could have been experienced unevenly by state, particularly with how politicised the pandemic and its mitigations were in the US.
Yeah, good catch. Meant to link to two sources, the census bureau admission and an article describing it. I forgot to paste one of them: https://thehill.com/opinion/campaign/3504546-census-blunder-...
Also worth pointing out that when the census can't collect individualized data, they estimate it based on existing government data. The quality of data varies significantly depending on the local government, and pretty much all governments were struggling to figure out the current state of things during the pandemic.