Ion mobility spectrometry is the tech that powers these, and they're VERY sensitive and VERY prone to false positives because it's just looking for ion signatures ("I smell a nitrate/glycerin/etc."). I'm not sure if they're changing modes on the machines between swabs or something, but the machine is a cue for more in-depth inspection, not "zomg I found a bomb". So, some repeated scanning to rule out a false positive or burn off gunk that's accumulated in the machine i.e. we just got a speck of something on the wand or something is gunking up the scanner as opposed to "someone covered in residue that is scary".
TIL! I appreciate the explanation, never considered them to be that sophisticated.