"Currently it is off by a factor of two, which sounds doable until you realize the spec is 100 tons, and they need to find 50 tons more capacity by shedding weight elsewhere in the system."
You can probably prolong the stack, exactly as they did with Falcon. Also, Raptor 3 is more powerful than previous models, and I would expect future Raptor 4 to add some oomph as well.
"But he's got a really big blind spot for the project management implications."
Uh, isn't Starbase evidence to the contrary? They can produce rockets and rocket engines faster than anyone else in the world. And Raptor unit cost is ridiculously low for a liquid rocket engine.