The other other way would be more structured. Arguments are not just an array, they also contain `--switch` and key/value pairs (e.g. `--key value` or `--key=value` depending on who you ask). One problem with the flat array approach is there's no way to distinguish a literal value starting with `-` from a switch, which means there needs to be some way to workaround that (and users have to remember the workaround; how often do people remember to use `rm -- "$FILENAME"`).
In practice almost every application does still need to do its own parameter parsing; a flat array is not enough.