Looking at the settings, its an option:

  Configure Overrides:                                                                                                                                                       
                                                                                                                                                                             
   1. Allow unsandboxed fallback                                                                                                                                            
    2. Strict sandbox mode (current)                                                                                                                                         
                                                                                                                                                                             
  Allow unsandboxed fallback: When a command fails due to sandbox restrictions, Claude can retry with dangerouslyDisableSandbox to run outside the sandbox (falling back to  
   default permissions).                                                                                                                                                     
                                                                                                                                                                             
  Strict sandbox mode: All bash commands invoked by the model must run in the sandbox unless they are explicitly listed in excludedCommands.

The purpose of the sandbox is to reduce permission fatigue. If it fails to run a command in the sandbox and retries it outside the sandbox, the regular permission rules apply. You'll still be prompted for any non-sandboxed tool calls that you haven't allowed or denied via permission rules.